The difficult, and worst offenders here are the ResourceLoader tests that have embedded js, but use spaces not tabs
Fixing those give https://gerrit.wikimedia.org/r/#/c/241341/ it causes whitespace related errors in https://integration.wikimedia.org/ci/job/mediawiki-phpunit-hhvm/15676/consoleFull
The other files would be the xml backup files which embed xml, and have leading spaces rather than tabs...