Steps to reproduce:
- create account on mw.org
- visit testwiki
- visit enwiki
You will be autologged in on enwiki, but not on testwiki. You will be autologged in there as well once you visit the login page (maybe because that starts a new session). Happens with other wikis as well.
Might be related to the AuthManager deployment, but I wouldn't swear it; I have seen the not-autologged-in-until-you-visit-the-login-page behavior in the past.