On trusty video scalers we use a a custom build of ffmpeg 2.7 (which isn't available in trusty). jessie has libav 11.7 as the default provider of the libav* libraries and ffmpeg 3.0.2 in jessie-backports in a co-installable manner (the binary names are different due to higher sonames). Due to that the jessie-based image/video scalers current have a mix of libav and ffmpeg: ffmpeg is provided in jessie-backports, but ffmpeg2theora is not, so it pulls in the binary packages from libav.
My proposal would be to rebuild ffmpeg2theora against ffmpeg from jessie-backports, so that we only use ffmpeg 3 on jessie scalers. @brion : Do you concur?