The gis database containing the OSM "render" database contains an extra table with coastline data. This table is in need of an update (see also https://github.com/dschwen/wikiminiatlas/issues/19)
I'll paste a bit of background info (from an email from @Apmon) into the next comment.
I suggest renaming the current coastline table, doing a fresh import into a new table names 'coastlines' and testing if it works. I think my tool will be the only one affected (possibly the labs osm tile servers and I do not know which server the production stuff uses...). Maybe importing into a separate DB and switching once teh import is complete is teh better solution.