Some of my tools, including autolist2, use a shared PHP library I wrote. Part of this includes working with temporary files, to save RAM. At one point, it runs a shell command to filter a result file. Example:
jq '.items' /data/project/autolist/tmp/omniscan_XS9zcO | sed 's/[^0-9]//g' | grep -v '^$' | sed -e 's/^/Q/' | sed -e 's/$/\t0/' | sort -u > /data/project/autolist/tmp/omniscan_cUIK9E
This runs fine under gridengine, but fails on kubernetes; there, it doesn't even create the output file.
I have restarted autolist2 webservice under gridengine, until this can be fixed.