As reported on the English Wikivoyage:
"Two subway lines cross at Roppongi station (also serving some neighbouring stations that some might find more convenient) but they are not visible on the map unless you zoom to house-level (and even then, they are masked by any street that happens to run above))
How about making subway/train lines more visible? Tourists tend to use public transport more than the locals. This is especially true for big cities and countries like Japan (but I guess we can't have per-area map styles). Thanks!Syced (talk) 06:03, 20 September 2016 (UTC)"
Adjusting the tiles to have a stylistic change is a little ways off according to Yuri. It would require some backend work that has yet to be started. However, I created this task to get it on our radar and share an example of the community's need.