Hi there! I think that the great benefit of Reply tool is that anybody can use [Reply] link or use standard "old way" to reply without changing Special:Preferences. Right now, the New discussion tool when enabled suppresses standard "old way" to add a topic and I think it can be a big disadvantage for advanced users.
I have got a suggestion how to solve the problem. When the New discussion tool is enabled, everyone can select what way is the best for concrete purpose. For some purposes is the best new way, for other purposes is the better old way. I think it can be an additional setting in Special:Preferences, which will be automatically turned on for advanced users. See file down.
This follows from the conversation I have with several Czech Wikipedians.
What do you think about the suggestion?