The PortableInfobox extension uses an aside element to wrap its infobox content. It seems that <aside> tags don't play well with p-wrapping in Parsoid, so an article containing such an extension tag will end up with empty p-wrappers around the tag.
Per discussion with @ssastry , we should probably make Parsoid aware of <aside> semantics like it was done for <figure> previously, to avoid this behavior.