In a newly-created Conda environment on stat1008, I cannot import Numpy. After Conda-installing Numpy in my stacked environment, I get a different error but it still doesn't work. This also means I cannot import Pandas, Matplotlib, or Wmfdata-Python since those all depend on Numpy.
In one previous attempt Conda-installing Numpy fixed it, so I was able to try importing Pandas and Matplotlib. Both of those then had their own import errors, but now I can't replicate that since they just give Numpy import error.
I've tried on stat1006 and stat1007, and things work correctly there so it must be something specific to that machine.
Errors and output
neilpquinn-wmf@stat1008:~$ conda list numpy # packages in environment at /home/neilpquinn-wmf/.conda/envs/2022-07-18T17.28.15_neilpquinn-wmf: # # Name Version Build Channel neilpquinn-wmf@stat1008:~$ conda list -n base numpy # packages in environment at /usr/lib/anaconda-wmf: # # Name Version Build Channel numpy 1.18.1 py37h95a1406_0 conda-forge/label/cf202003
The import error I get:
---------------------------------------------------------------------------
ModuleNotFoundError Traceback (most recent call last)
File /usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/core/__init__.py:24, in <module>
23 try:
---> 24 from . import multiarray
25 except ImportError as exc:
File /usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/core/multiarray.py:14, in <module>
12 import sys
---> 14 from . import overrides
15 from . import _multiarray_umath
File /usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/core/overrides.py:7, in <module>
5 import textwrap
----> 7 from numpy.core._multiarray_umath import (
8 add_docstring, implement_array_function, _get_implementing_args)
9 from numpy.compat._inspect import getargspec
ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
During handling of the above exception, another exception occurred:
ImportError Traceback (most recent call last)
Input In [2], in <cell line: 1>()
----> 1 import numpy
File /usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/__init__.py:142, in <module>
139 # Allow distributors to run custom init code
140 from . import _distributor_init
--> 142 from . import core
143 from .core import *
144 from . import compat
File /usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/core/__init__.py:54, in <module>
26 import sys
27 msg = """
28
29 IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
(...)
52 """ % (sys.version_info[0], sys.version_info[1], sys.executable,
53 __version__, exc)
---> 54 raise ImportError(msg)
55 finally:
56 for envkey in env_added:
ImportError:
IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
Importing the numpy c-extensions failed.
- Try uninstalling and reinstalling numpy.
- If you have already done that, then:
1. Check that you expected to use Python3.9 from "/home/neilpquinn-wmf/.conda/envs/2022-07-18T17.28.15_neilpquinn-wmf/bin/python",
and that you have no directories in your PATH or PYTHONPATH that can
interfere with the Python and numpy version "1.18.1" you're trying to use.
2. If (1) looks fine, you can open a new issue at
https://github.com/numpy/numpy/issues. Please include details on:
- how you installed Python
- how you installed numpy
- your operating system
- whether or not you have multiple versions of Python installed
- if you built from source, your compiler versions and ideally a build log
- If you're working with a numpy git repository, try `git clean -xdf`
(removes all files not under version control) and rebuild numpy.
Note: this error has many possible causes, so please don't comment on
an existing issue about this - open a new one instead.
Original error was: No module named 'numpy.core._multiarray_umath'Output from installing Numpy in my stacked environment:
neilpquinn-wmf@stat1008:~$ conda install numpy
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.11.0
latest version: 4.13.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/neilpquinn-wmf/.conda/envs/2022-07-18T17.54.26_neilpquinn-wmf
added / updated specs:
- numpy
The following NEW packages will be INSTALLED:
blas pkgs/main/linux-64::blas-1.0-mkl
intel-openmp pkgs/main/linux-64::intel-openmp-2021.4.0-h06a4308_3561
mkl pkgs/main/linux-64::mkl-2021.4.0-h06a4308_640
mkl-service pkgs/main/linux-64::mkl-service-2.4.0-py39h7f8727e_0
mkl_fft pkgs/main/linux-64::mkl_fft-1.3.1-py39hd3c417c_0
mkl_random pkgs/main/linux-64::mkl_random-1.2.2-py39h51133e4_0
numpy pkgs/main/linux-64::numpy-1.22.3-py39he7a7128_0
numpy-base pkgs/main/linux-64::numpy-base-1.22.3-py39hf524024_0
Preparing transaction: done
Verifying transaction: done
Executing transaction: doneNow there's a new error:
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
Input In [3], in <cell line: 1>()
----> 1 import numpy
File ~/.conda/envs/2022-07-18T17.54.26_neilpquinn-wmf/lib/python3.9/site-packages/numpy/__init__.py:112, in <module>
109 import sys
110 import warnings
--> 112 from ._globals import (
113 ModuleDeprecationWarning, VisibleDeprecationWarning,
114 _NoValue, _CopyMode
115 )
117 # We first need to detect if we're being called as part of the numpy setup
118 # procedure itself in a reliable manner.
119 try:
ImportError: cannot import name '_CopyMode' from 'numpy._globals' (/usr/lib/anaconda-wmf/lib/python3.7/site-packages/numpy/_globals.py)