When dropping rcenhancedfilters-seen-tour from loginwiki (~21 millions of DB rows) via userOptions.php, I encountered the following issue:
[urbanecm@mwmaint1002 ~]$ mwscript userOptions.php --wiki=loginwiki --delete rcenhancedfilters-seen-tour
[...] # very long SQL query with a lot of user IDs
Function: UserOptionsMaintenance::deleteOptions
Error: 2006 MySQL server has gone away
#0 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/Database.php(1187): Wikimedia\Rdbms\Database->getQueryException('MySQL server ha...', 2006, 'DELETE FROM `us...', 'UserOptionsMain...')
#1 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/Database.php(1161): Wikimedia\Rdbms\Database->getQueryExceptionAndLog('MySQL server ha...', 2006, 'DELETE FROM `us...', 'UserOptionsMain...')
#2 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/Database.php(652): Wikimedia\Rdbms\Database->reportQueryError('MySQL server ha...', 2006, 'DELETE FROM `us...', 'UserOptionsMain...', false)
#3 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/Database.php(1735): Wikimedia\Rdbms\Database->query(Object(Wikimedia\Rdbms\Query), 'UserOptionsMain...')
#4 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/DBConnRef.php(126): Wikimedia\Rdbms\Database->delete('user_properties', Array, 'UserOptionsMain...')
#5 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/database/DBConnRef.php(583): Wikimedia\Rdbms\DBConnRef->__call('delete', Array)
#6 /srv/mediawiki/php-1.43.0-wmf.3/includes/libs/rdbms/querybuilder/DeleteQueryBuilder.php(229): Wikimedia\Rdbms\DBConnRef->delete('user_properties', Array, 'UserOptionsMain...')
#7 /srv/mediawiki/php-1.43.0-wmf.3/maintenance/userOptions.php(289): Wikimedia\Rdbms\DeleteQueryBuilder->execute()
#8 /srv/mediawiki/php-1.43.0-wmf.3/maintenance/userOptions.php(80): UserOptionsMaintenance->deleteOptions()
#9 /srv/mediawiki/php-1.43.0-wmf.3/maintenance/includes/MaintenanceRunner.php(698): UserOptionsMaintenance->execute()
#10 /srv/mediawiki/php-1.43.0-wmf.3/maintenance/run.php(51): MediaWiki\Maintenance\MaintenanceRunner->run()
#11 /srv/mediawiki/multiversion/MWScript.php(158): require_once('/srv/mediawiki/...')
#12 {main}
[urbanecm@mwmaint1002 ~]$