As of version 13.1.1 the Debian Grafana package no longer includes Prometheus as built-in data source but adds it as a separate plugin [1] [2], this means that it requires to be installed as part of the grafana-plugins repository.
Logs:
Aug 26 03:48:27 grafana2001 grafana[1211199]: logger=context userId=709 orgId=1 uname=denisse t=2026-08-26T03:48:27.842393423Z level=error msg="Could not find plugin definition for data source" datasource_type=prometheus
Looking deeper at error logs it seems to be affecting other datasources that are now installed as plugins:
The plugins that we don't need and are not installed should be added to the disable_plugins section so Grafana doesn't try to load them to prevent it from generating useless logs.
[1] https://github.com/grafana/grafana/pull/123035
[2] https://grafana.com/grafana/plugins/prometheus/changelog/
[3] https://grafana.com/docs/grafana/latest/setup-grafana/configure-grafana/#disable_plugins