Still seeing things like this occasionally:

2014-07-24 18:01:35 mw1191 outreachwiki: Sub-optimal transaction on DB(s) [10.64.16.27 (outreachwiki) (TRX#9ebd0c667c2b)]:
0 0.003455 query-m: UPDATE page SET page_links_updated = 'X' [TRX#9ebd0c667c2b]
1 0.000335 query-m: BEGIN
2 0.002425 query-m: DELETE FROM protected_titles WHERE pt_namespace = 'X' [TRX#9ebd0c667c2b]
3 0.000422 query-m: REPLACE INTO updates (up_page,up_action,up_timestamp,up_sequence) VALUES ('X',NULL) [TRX#9ebd0c667c2b]
4 0.002569 query-m: DELETE FROM revtag WHERE rt_page = 'X' [TRX#9ebd0c667c2b]
5 0.001807 query-m: DELETE FROM translate_groupstats WHERE tgs_group = 'X' [TRX#9ebd0c667c2b]
6 0.001250 query-m: REPLACE INTO revtag (rt_page,rt_type,rt_revision,rt_value) VALUES ('X') [TRX#9ebd0c667c2b]
7 0.000414 query-m: INSERT IGNORE INTO translate_groupstats (tgs_group,tgs_lang,tgs_total,tgs_translated,tgs_fuzzy,tgs_proofread) VALUES ('X') [TRX#9ebd0c667c2b]
8 0.000831 query-m: INSERT IGNORE INTO translate_groupstats (tgs_group,tgs_lang,tgs_total,tgs_translated,tgs_fuzzy,tgs_proofread) VALUES ('X') [TRX#9ebd0c667c2b]
9 0.004765 query-m: INSERT IGNORE INTO translate_groupstats (tgs_group,tgs_lang,tgs_total,tgs_translated,tgs_fuzzy,tgs_proofread) VALUES ('X') [TRX#9ebd0c667c2b]
10 0.005821 query-m: INSERT IGNORE INTO translate_groupstats (tgs_group,tgs_lang,tgs_total,tgs_translated,tgs_fuzzy,tgs_proofread) VALUES ('X') [TRX#9ebd0c667c2b]
...
366 0.005821 query-m: INSERT IGNORE INTO translate_groupstats (tgs_group,tgs_lang,tgs_total,tgs_translated,tgs_fuzzy,tgs_proofread) VALUES ('X') [TRX#9ebd0c667c2b]

There must have been some >= 3 second method but the log entry was cutoff (being too long). Can these sorts of large updates always use the job queue?