Following crash happened when running update:
19:46:43.487 [main] DEBUG o.w.query.rdf.tool.rdf.RdfRepository - Setting last updated time to Tue Apr 28 16:47:33 UTC 2015 Exception in thread "main" org.wikidata.query.rdf.tool.exception.ContainedException: Non-200 response from triple store: HttpResponseProxy{HTTP/1.1 500 Server Er ror [Content-Type: text/plain, Transfer-Encoding: chunked, Server: Jetty(9.2.z-SNAPSHOT)] ResponseEntityProxy{[Content-Type: text/plain,Chunked: true]}} body= SPARQL-UPDATE: updateStr=DELETE { <http://www.wikidata.org> <http://schema.org/dateModified> ?o . } WHERE { <http://www.wikidata.org> <http://schema.org/dateModified> ?o . }; INSERT DATA { <http://www.wikidata.org> <http://schema.org/dateModified> "2015-04-28T16:47:33.000Z"^^<xsd:dateTime> . } java.util.concurrent.ExecutionException: java.util.concurrent.ExecutionException: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: Problem with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0, challisField=2740925, version=3, nextOffset=3775731623797917, localTime=1430247841782 [Tu esday, April 28, 2015 7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC], lastCommitTime=1430247841781 [Tuesday, April 28, 201 5 7:04:01 PM UTC], commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422}, commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1 , quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388, storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42, checksum=-498521427 , createTime=1428691460132 [Friday, April 10, 2015 6:44:20 PM UTC], closeTime=0} at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:188) at com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:261) at com.bigdata.rdf.sail.webapp.QueryServlet.doSparqlUpdate(QueryServlet.java:359) at com.bigdata.rdf.sail.webapp.QueryServlet.doPost(QueryServlet.java:165) at com.bigdata.rdf.sail.webapp.RESTServlet.doPost(RESTServlet.java:237) at com.bigdata.rdf.sail.webapp.MultiTenancyServlet.doPost(MultiTenancyServlet.java:137) at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:769) at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:585) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:577) at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:223) at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1125) at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:515) at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1059) at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) at org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:215) at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:110) at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:97) at org.eclipse.jetty.server.Server.handle(Server.java:497) at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311) at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:248) at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:540) at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:610) at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:539) at java.lang.Thread.run(Thread.java:745) Caused by: java.util.concurrent.ExecutionException: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: Problem with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0, challisField=2740925, version=3, nextOffset=3775731623797917, localTime=1430247841782 [Tuesday, April 28, 2015 7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC], lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC], commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422}, commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1, quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388, storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42, checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20 PM UTC], closeTime=0} at java.util.concurrent.FutureTask.report(FutureTask.java:122) at java.util.concurrent.FutureTask.get(FutureTask.java:188) at com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:460) at com.bigdata.rdf.sail.webapp.QueryServlet$SparqlUpdateTask.call(QueryServlet.java:371) at com.bigdata.rdf.task.ApiTaskForIndexManager.call(ApiTaskForIndexManager.java:68) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at com.bigdata.rdf.task.AbstractApiTask.submitApiTask(AbstractApiTask.java:365) at com.bigdata.rdf.sail.webapp.BigdataServlet.submitApiTask(BigdataServlet.java:258) ... 26 more Caused by: org.openrdf.query.UpdateExecutionException: java.lang.RuntimeException: Problem with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0, challisField=2740925, version=3, nextOffset=3775731623797917, localTime=1430247841782 [Tuesday, April 28, 2015 7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC], lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC], commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422}, commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1, quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388, storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42, checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20 PM UTC], closeTime=0} at com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1303) at com.bigdata.rdf.sail.BigdataSailUpdate.execute2(BigdataSailUpdate.java:152) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$UpdateTask.doQuery(BigdataRDFContext.java:1683) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.innerCall(BigdataRDFContext.java:1310) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:1275) at com.bigdata.rdf.sail.webapp.BigdataRDFContext$AbstractQueryTask.call(BigdataRDFContext.java:517) at java.util.concurrent.FutureTask.run(FutureTask.java:262) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) ... 1 more Caused by: java.lang.RuntimeException: Problem with entry at -711345699177889370: lastRootBlock=rootBlock{ rootBlock=0, challisField=2740925, version=3, nextOffset=3775731623797917, localTime=1430247841782 [Tuesday, April 28, 2015 7:04:01 PM UTC], firstCommitTime=1428692901050 [Friday, April 10, 2015 7:08:21 PM UTC], lastCommitTime=1430247841781 [Tuesday, April 28, 2015 7:04:01 PM UTC], commitCounter=2740925, commitRecordAddr={off=NATIVE:-165623078,len=422}, commitRecordIndexAddr={off=NATIVE:-155674208,len=220}, blockSequence=1, quorumToken=-1, metaBitsAddr=2455328113296235, metaStartAddr=952388, storeType=RW, uuid=f8287971-835c-4bb1-9b83-215d38565a61, offsetBits=42, checksum=-498521427, createTime=1428691460132 [Friday, April 10, 2015 6:44:20 PM UTC], closeTime=0} at com.bigdata.journal.AbstractJournal.commit(AbstractJournal.java:3113) at com.bigdata.rdf.store.LocalTripleStore.commit(LocalTripleStore.java:99) at com.bigdata.rdf.sail.BigdataSail$BigdataSailConnection.commit2(BigdataSail.java:3370) at com.bigdata.rdf.sail.BigdataSailRepositoryConnection.commit2(BigdataSailRepositoryConnection.java:272) at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertCommit(AST2BOpUpdate.java:353) at com.bigdata.rdf.sparql.ast.eval.AST2BOpUpdate.convertUpdate(AST2BOpUpdate.java:307) at com.bigdata.rdf.sparql.ast.eval.ASTEvalHelper.executeUpdate(ASTEvalHelper.java:1295) ... 9 more Caused by: java.lang.RuntimeException: Problem with entry at -711345699177889370 at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4967) at com.bigdata.rwstore.RWStore.checkDeferredFrees(RWStore.java:3539) at com.bigdata.journal.RWStrategy.checkDeferredFrees(RWStrategy.java:781) at com.bigdata.journal.AbstractJournal$CommitState.writeCommitRecord(AbstractJournal.java:3476) at com.bigdata.journal.AbstractJournal$CommitState.access$2800(AbstractJournal.java:3278) at com.bigdata.journal.AbstractJournal.commitNow(AbstractJournal.java:4088) at com.bigdata.journal.AbstractJournal.commit(AbstractJournal.java:3111) ... 15 more Caused by: java.lang.RuntimeException: addr=-157604858 : cause=java.lang.IllegalStateException: Bad Address: length requested greater than allocated slot at com.bigdata.rwstore.RWStore.getData(RWStore.java:2190) at com.bigdata.rwstore.RWStore.getData(RWStore.java:1989) at com.bigdata.rwstore.RWStore.getData(RWStore.java:2033) at com.bigdata.rwstore.RWStore.getData(RWStore.java:1989) at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4857) at com.bigdata.rwstore.RWStore.freeDeferrals(RWStore.java:4953) ... 21 more Caused by: java.lang.IllegalStateException: Bad Address: length requested greater than allocated slot at com.bigdata.rwstore.RWStore.getData(RWStore.java:2082) ... 26 more at org.wikidata.query.rdf.tool.rdf.RdfRepository.execute(RdfRepository.java:296) at org.wikidata.query.rdf.tool.rdf.RdfRepository.updateLeftOffTime(RdfRepository.java:255) at org.wikidata.query.rdf.tool.Update.run(Update.java:235) at org.wikidata.query.rdf.tool.Update.main(Update.java:100)