In the Wanted Pages query (found in `includes/specials/SpecialWantedpages.php.getQueryInf()`), there is a check that the "from" namespace is not MediaWiki space. This check, however, is performed on the `pg2` table, and alias of the `page` table, which is on the "wrong" side of the join. Since that information is also available in `pagelinks` itself, it is notably more efficient to check against that copy of it, rather than the joined copy.
TLDR: change
* `'pg2.page_namespace != ' . $dbr->addQuotes( NS_MEDIAWIKI )` to
* `pl_from_namespace != ' . $dbr->addQuotes( NS_MEDIAWIKI )`
On our wiki, this results in a reduction from 41 seconds, returning 7830 rows, to 4.7 seconds, returning those same 7830 rows. The only potential issue here is if, for some reason, `pagelinks.pl_from_namespace` becomes out of sync with the equivalent `page.page_namespace` after joining. (And if it does, you've probably got bigger issues.)