Here are the screenshots of the Advanced tab of the old search interface via Google Chrome (current ver. 97.0.4692.99)
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The boxes seen in two screenshots look awkward and may not align well, depending on how you adjust Google Chrome's window size.
Strangely, no issues with namespace checkboxes while using Firefox (current ver. 96.0.3)
Probably this is OOUI- or Chrome-related?
To test this out, first disable the Advanced Search via user preferences.