Regression from T124372 (https://gerrit.wikimedia.org/r/#/c/266235)
When alertCount is 0 and messageCount is 0 the line in echo_unread_wikis is neither updated nor deleted. See https://phabricator.wikimedia.org/diffusion/ECHO/browse/master/includes/UnreadWikis.php;2901417a580506c14077e1635bc1f4398db5857a$104
Removing that condition would help but we may not want the backfill script to create a 0,0 row for every single user.