This was raised several hours ago. The Wikipedia portal site (www.wikipedia.org) does not include zh (中文) in the list.
While zhwiki is not the only site facing this problem, it is the most noticeable site that is missing in the list. As a site that has 13th most articles, it should have been in the 1,000,000+ list, but it isn't. According to meta:List of Wikipedias, zhwiki is the only site missing in that list (tier).
Also, glancing over the 100,000+ list, the number also mismatches.
I well remembered that zhwiki was on that list last year. Is this a software bug, or some deliberate action?